renzhonglu's repositories
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
awesome-deep-learning
A curated list of awesome Deep Learning tutorials, projects and communities.
awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
awesome-network-analysis
A curated list of awesome network analysis resources.
AwesomeGenomics
Cancer Data Science's go to place for excellent genomics tools and packages
CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
conda
OS-agnostic, system-level binary package manager and ecosystem
diamond
Accelerated BLAST compatible local sequence aligner.
gephi
Gephi - The Open Graph Viz Platform
idr
IDR
leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
Logical_modelling_pipeline
Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, developed by the Computational Systems Biology of Cancer group in Bioinformatics Laboratory of Institut Curie (Paris)
NHS_R_Advanced_Modelling_Supervised_ML
Supervised ML tutorials for the NHS-R community
psichomics
Interactive R package to quantify, analyse and visualise alternative splicing data
ReactionMiner
Tool to predict (bio)chemical reactions using graph mining.
scikit-learn
scikit-learn: machine learning in Python
scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
SUPPA
SUPPA2: Fast quantification of differential splicing
TPMCalculator
TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files