Beast code in Giters

René Xavier's starred repositories

Trycycler

A tool for generating consensus long-read assemblies for bacterial genomes

Language:PythonGPL-3.030300

megahit

Ultra-fast and memory-efficient (meta-)genome assembler

Language:C++GPL-3.058000

shovill

⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

Language:PerlGPL-3.020800

SKESA

SKESA assembler

Language:C++NOASSERTION11100

fasta36

Git repository for FASTA36 sequence comparison software

Language:CApache-2.011600

GeneLab_Data_Processing

Language:Jupyter Notebook6000

abundance-viz-metabarcoding

Language:R100

16s-interactive-tree

replaced by metabarcode-interactive-tree

Language:RGPL-3.0100

taxaTarget

Language:Python400

arrower-js

small script to draw multi genes locus (e.g. Biosynthetic Gene Clusters) as a dynamic SVG object

Language:JavaScriptGPL-3.0100

2021-petabyte-example

Language:Python100

meta_decoder

Decoding metagenomes: a reference-based metagenomics workflow

Language:Python100

2021-ggg-201b-lab-hw1

Language:Python100

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

Language:PythonMIT23700

2020-GGG298

Language:Python1000

training-and-engagement

Materials for the Training and Engagement Website

Language:HTMLNOASSERTION2500

GToTree

A user-friendly workflow for phylogenomics

Language:ShellGPL-3.019700

BanfieldLabProjects

An index describing the public and private repositories that Banfield lab members can request access to.

700

MetaSanity

Pipeline for major biological analyses.

Language:PythonGPL-3.03400

Autometa

Autometa: Automated Extraction of Genomes from Shotgun Metagenomes

Language:PythonNOASSERTION4000