reimandlab

reimandlab

Geek Repo

Github PK Tool:Github PK Tool

reimandlab's repositories

ActivePathways

Integrative pathway enrichment analysis of multivariate omics data

ActiveDriverDB

ActiveDriverDB

Language:PythonLicense:LGPL-2.1Stargazers:12Issues:5Issues:146

ActiveDriverWGSR

ActiveDriverWGSR is an R package for discovery of cancer driver genes and non-coding elements in whole genome sequencing data

CA2M_v2

CA2M: chromatin accessibility and mutations in cancer genomes

Language:RStargazers:2Issues:2Issues:0

needleplot

Another needleplot for mutation data, used by ActiveDriverDB

Language:JavaScriptLicense:LGPL-2.1Stargazers:2Issues:3Issues:0

CA2M

Chromatin accessibility of primary human cancers ties regional mutational processes with tissues of origin (repository for paper)

Language:RStargazers:1Issues:2Issues:0

CNNClassifier

Convolutional Neural Net for Sequence Classification

Language:RStargazers:1Issues:2Issues:0

DPM_publication_code

DPM: code and input files for the publication

Language:RStargazers:1Issues:0Issues:0

lncRNAs_TCGA

Code I have used throughout my Masters analyzing TCGA clinical and RNA-Seq datasets to discover lncRNA prognostic markers

Language:RStargazers:1Issues:2Issues:0

shiny-web-form

A web form created as a shiny app for literature analysis

Language:RStargazers:1Issues:3Issues:0
Language:RStargazers:0Issues:3Issues:0
Language:RLicense:GPL-3.0Stargazers:0Issues:3Issues:4
Language:RStargazers:0Issues:3Issues:0

muts-needle-plot

A needle plot for mutation data

Language:JavaScriptStargazers:0Issues:3Issues:0

PPI_network_based_gene_type_prediction_model

This is the repository for Reagan (Gen) LI's BCB430 summer project.

Language:RStargazers:0Issues:0Issues:0
Language:RubyStargazers:0Issues:2Issues:0

RM2

Regression Models for Localised Mutations

Language:RStargazers:0Issues:2Issues:2
Language:HTMLLicense:NOASSERTIONStargazers:0Issues:1Issues:0
Language:RLicense:MITStargazers:0Issues:4Issues:0

rmimp

Predicting the impact of mutations on kinase–substrate phosphorylation

Language:RStargazers:0Issues:3Issues:0

ShinyActivePathways

A shiny web server that performs ActivePathways and display results in Enrichment map

Language:RStargazers:0Issues:0Issues:0