The Reich Lab at UMass-Amherst's repositories
adaptively-weighted-ensemble
Code and manuscript for adaptively weighted ensembles via stacking
dengue-thailand-2014-forecasts
Code and public data for "Challenges in real-time prediction of infectious disease: a case study of dengue in Thailand"
article-disease-pred-with-kcde
Article: Infectious Disease Prediction with Kernel Conditional Density Estimation.
densitystackr
R package implement model stacking for models that output predictive distributions.
flusight-csv-tools
Node toolkit for CDC FluSight format CSVs
online-lag-ensemble
Lag aware online ensembling
dengue-data-stub
If you clone this project, change to the root directory, and do `remake::make()` it will download time-series for Dengue in Thailand, at the moment a few things are hard-coded still.
FluSight-package
An R package containing functions used in the CDC Flu Forecasting competition
flusight-test
Repository for testing prediction models with flusight
forecastTools
An R package with tools for managing, evaluating forecasts of time-series
mvtnorm-mod-kcde
A version of R's mvtnorm package with minor modifications yielding approximately 30% speedups in KCDE estimation with pdtmvn-based kernel functions and discrete variables.
pdtmvn
R package implementing partially discretized truncated multivariate normal distributions
reviewMID
Review of model formulations and estimation strategies for infectious disease models
shiny-predictions
A Shiny app for visualizing predictions.
tracking-ensemble
Dynamic weight ensembles
xgboost-mod
The xgboost package for gradient boosting, modified to allow inference with non-convex loss functions.