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R. Eric Collins (rec3141)

rec3141

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Company:University of Alaska Fairbanks

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R. Eric Collins's repositories

pangenome

Models of the Microbial Pangenome

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diversity-scripts

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VirFinder

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

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microscape

Visualizing Microbial Landscapes

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sedna

SEDNA: Spherical Exploration of Diversity using Nucleic Acid sequences

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ag_thesis

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bbpipe-snakemake

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cs228-material

Teaching materials for the probabilistic graphical models and deep learning classes at Stanford

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DOSNES

Doubly Stochastic Neighbor Embedding on Spheres

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FIt-SNE

Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

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Genomic-Signatures-of-OGT-2020-

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Image_Classifier_Application

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image_classifier_pytorch

This is the repo for the Free Code Camp article, "How to build an image classifier with greater than 97% accuracy." Classifier utilizes Python, PyTorch, Numpy, Matplotlib, Seaborn, JSON, and PIL.

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metta

metagenome assembly, binning, and visualization

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mlites

Machine Learning in the Environmental Sciences

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OGT_prediction

Scripts for calculating features and regression of prokaryote OGT

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Oncoscape

a web application to apply/develop analysis tools for Molecular and Clinical data

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p3_docs

This repository is for manage PATRIC static contents such as Website Tutorial, CLI Tutorial, User Guides, and PATRIC eNews.

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pavian

Interactive analysis of metagenomics data

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Research

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rml_thesis

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Rtsnesphere

R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding WITH SPHERICAL EMBEDDING

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Schmidt_et_al_2016_community_similarity

Analysis code for a manuscript on community similarity computation

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seattlecrows

Automatically exported from code.google.com/p/seattlecrows

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sverdrup

Sverdrup's 1953 Critical Depth Hypothesis

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taxonomy

taxonomy R packages

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topic-functional-annotation

A repository for the lessons and notebooks used for Binder tutorials

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topic-metagenomics

A repository for the lessons and notebooks used for Binder tutorials

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underway

R scripts for real-time analysis of underway flow-through data aboard the USCGC Healy and other ships running MetAcq software

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visualizations-in-microbiology

Data and images for communicating concepts in microbiology

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