Sagayamary Sagayaradj's repositories
alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
appliedgenomics2018
Materials for Spring 2018 Applied Genomics Course
bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
bovine-graphs
Integrate multiple genome assemblies into a pangenome graph
Code_Ae_tauschiiDiversity
Code and scripts for Ae. tauschii diversity analysis
Data-Science--Cheat-Sheet
Cheat Sheets
datastructures2018
Materials for JHU Data Structures 2018
FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
nano_diagnositcs
Documentation of analyses and commands used as part of the PhD project investigating next generation diagnostics
pbbioconda
PacBio Secondary Analysis Tools on Bioconda
Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
Python-for-Bioinformatics
Python for Bioinformatics consist of a variety of python programmes,frequently used by bioinformaticians while handling biological data especially raw NGS data.
PythonForBioinformatics
This repository will be helpful to start using python for your Bioinformatics projects.
R-for-Plant-Breeding
R for Plant Breeding is open source resource to lear the Plant Breeding and Genetics related data analysis and visualizations
RethinkingV2_Julin.Maloof
Repository for Statistical Rethinking V2 from Julin.Maloof
snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
stat_rethinking_2022
Statistical Rethinking course winter 2022
sv-pipeline
Pipeline for structural variation detection in cohorts
SV_Benchmark_CMRG
Structural variant benchmark of challenging medically relevant genes