rdpapworth

PythonStdioGames

A collection of text-based games written in Python 3 that only use "standard i/o".

cellxgene

An interactive explorer for single-cell transcriptomics data

cbioportal

cBioPortal for Cancer Genomics

datasets

Images and other data from the JUMP Cell Painting Consortium

pyhamilton

Python for Hamilton liquid handling robots

autoprotocol-python

Python library for generating Autoprotocol

glossary

Data Glossary 🧠: An interactive digital garden for deeper data exploration. Learn through a graph and backlinks, enabling layered knowledge discovery.

pycytominer

Python package for processing image-based profiling data

allotropy

A Python library for converting instrument data into Allotrope Simple Model (ASM)

FASMIFRA

Molecular Generation by Fast Assembly of SMILES Fragments

isa-api

ISA tools API

CSBB-Shiny

Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis

sapio-py-tutorials

Tutorial on how to use Sapio platform in Python 3.

LIMS

Laboratory Information Management System

integration-examples

Example usage of the Benchling API: https://docs.benchling.com/

RanDepict

This repository contains RanDepict, an easy-to-use utility to generate a big variety of chemical structure depictions (random depiction styles and image augmentations) based on RDKit, CDK, Indigo and PIKAChU.

HumanBreast10X

elabapi-python

eLabFTW REST API v2 Python library

reproducible-data-science-python

Reproducible Data Science with Python

cookiecutter-r-analysis

Cookiecutter template for an R analysis project

reproducible-science

hillfit

Fitting the Hill Equation to Experimental Data

quantori-pesn-python-sdk

Quantori Python SDK for PerkinElmer Signals Notebook

adfv2_cdm_metadata

Azure Data Factory (ADFv2) copy pipeline adding metadata using Common Data Model (CDM) structure

flopr

An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader data, and removing debris and doublets and calibration of flow cytometry data.

IDD-Papers-AI4DR

Repository for the code associated with the paper 'AI4DR: Development and Implementation of an Annotation System for High-Throughput Dose-Response Experiments'

scinote-python-api-client-example

SemanticWeb

Programming the Semantic Web

data_schema

Data schema used for the cheminfo ELN

ClimbToLabguruExporter

Basic tools for exporting sample data from Climb into Labguru