rbakker

HBP-morphology-viewer

Web-based 3d neuron morphology viewer

MultiAtlasRegistration

Multi Atlas Registration pipeline for estimating brain areas in MRI images on the basis of a set of manually segmented examples.

cocomac-jsondb

Contains the raw data of cocomac in more or less human readable form

FancyPipe

FancyPipe is a lightweight python package for running data processing pipelines. It takes care of parallel processing, html-based logging, parameter management, garbage collection and error handling.

brainaddress

A brain address points to a location in a reference brain, publicly hosted by one of our registered brain atlas providers.

cyclevision

inschrijving CycleVision

BAS-files

Contains atlas definition files for the Brain Addressing System

brainaddress-providers

cocomac-engine

The engine that powers the cocomac.g-node.org website (search wizard and interactive results)

cyclevision2022

fancylog

Fancy logging tool for python pipelines

FancySite

Need a website with a consistent layout, but want to write your own php/html? FancySite is an extremely lightweight library that allows you to take

fiind

Ferret interactive integrated neurodevelopment atlas. Check out the website https://neuroanatomy.github.io/fiind/

git-tutorial

greedy-neuron-stitcher

HBP-slice-aligner

JSON.minify

Simple minifier for JSON to remove comments and whitespace

OneCut

possum-pipelines

retreat

sba-composer

Scalable Brain Atlas - Composer

sba-dev

thalamocortical

where-in-the-brain

micro-standard to specify location in the brain

x3dom

X3DOM. A framework for integrating and manipulating X3D scenes as HTML5/DOM elements.