raymondkiu / R-scripts-graphing-statistics

My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq

R_plots

This is my R scripts archive for publication-ready analysis and plotting including:

1. PCA

2. Area plot

3. Dotplot
   

4. Heatmap

5. Bar plots for 16S metagenomics

6. World map

7. Rarefraction curve for diversity analysis
   

8. Volcano plot (RNAseq)

9. MA plot (RNAseq)

10. Column plot using Geom_bar
    

11. Faceted bar plot

R scripts for program:

1. Hierbaps: phylogenetic clustering method
2. Diversity index: Inverse Simpson, Fisher Alpha and Shannon-Weaver
3. Sleuth (RNAseq)
4. DESeq 2