Giters
ratnera

ratnera

Geek Repo

0

followers

0

following

11

stars

Github PK Tool:Github PK Tool

ratnera's starred repositories

mothur

Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.

Language:C++License:GPL-3.0Stargazers:261Issues:0Issues:0

getting_started_with_qiime2

introductory tutorial for qiime2

Language:JavaScriptLicense:GPL-3.0Stargazers:6Issues:0Issues:0

snippy

:scissors: :zap: Rapid haploid variant calling and core genome alignment

Language:PerlLicense:GPL-2.0Stargazers:460Issues:0Issues:0

Scoary

Pan-genome wide association studies

Language:PythonLicense:GPL-3.0Stargazers:147Issues:0Issues:0

seq2mlst

In silico multi-locus sequence typing (MLST) for bacterial genomes

License:GPL-3.0Stargazers:8Issues:0Issues:0

STing

Ultrafast sequence typing and gene detection from NGS raw reads

Language:C++License:NOASSERTIONStargazers:19Issues:0Issues:0

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

Language:PerlStargazers:801Issues:0Issues:0

srst2

Short Read Sequence Typing for Bacterial Pathogens

Language:PythonLicense:NOASSERTIONStargazers:124Issues:0Issues:0

WhatsGNU

WhatsGNU: a tool for identifying proteomic novelty

Language:PythonLicense:GPL-3.0Stargazers:8Issues:0Issues:0

parallel-fastq-dump

parallel fastq-dump wrapper

Language:PythonLicense:MITStargazers:267Issues:0Issues:0

Bacsort

a collection of scripts for organising bacterial genomes by species

Language:PythonLicense:GPL-3.0Stargazers:75Issues:0Issues:0