Rasmus Henningsson's repositories
VariantCallFormat.jl
Read and write VCF and BCF files
SingleCell10x.jl
Load Single Cell 10x data
KernelDensitySJ.jl
Bandwidth selection using Sheather and Jones algorithm (sometimes known as width.SJ or bw.SJ)
SCTransform.jl
Single Cell RNA-seq normalization using regularized negative binomial regression
AlignUtils.jl
Iterative alignment of (viral) sequencing data using bwa
DISSEQT.jl
DISSEQT – DIStribution based modeling of SEQuence Space Time dynamics
SubMatrixSelectionSVD.jl
SubMatrix Selection Singular Value Decomposition
SynapseClient.jl
Wrapper for the Synapse Python Client
BamReader.jl
Julia implementation of Bam file reading
DocOpt.jl
command line arguments parser
Gating.jl
Experimental Gating GUI for different kinds of data using Makie.jl
General
The official registry of general Julia packages
GeneticVariation.jl
Datastructures and algorithms for working with genetic variation
julia
The Julia Language: A fresh approach to technical computing.
LinearMaps.jl
A Julia package for defining and working with linear maps, also known as linear transformations or linear operators acting on vectors. The only requirement for a LinearMap is that it can act on a vector (by multiplication) efficiently.
math
Boost.org math module
MLStyle.jl
Julia functional programming infrastructures and metaprogramming facilities
NearestNeighborDescent.jl
Efficient approximate k-nearest neighbors graph construction and search in Julia
Observables.jl
observable refs
PkgTemplates.jl
Create new Julia packages, the easy way
PlotlyJS.jl
Julia library for plotting with plotly.js
RandomizedLinAlg.jl
Randomized algorithms for numerical linear algebra in Julia
SimpleGraphs.jl
Convenient way to handle simple graphs and digraphs
SingleCell10xWriter.jl
Experimental package for writing cellranger-style .h5 file.
SynapseTools.jl
Tools for working with Synapse
SynapseUploadUtils.jl
Simple uploading script for adding raw data to Synapse
UMAP.jl
Uniform Manifold Approximation and Projection (UMAP) implementation in Julia
WebIO.jl
A bridge between Julia and the Web.