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raphael-group

raphael-group

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raphael-group's repositories

magi

A web application from the Raphael Lab for mutation annotation and genome interpretation.

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gd3

Javascript library for visualizing genomics data with D3.

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multibreak-sv

MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combination of sequencing platforms.

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multi-dendrix

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CNT-ILP

Integer Linear Program for the Copy-Number Tree Problem

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TADtree

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cna-processing

Script for taking the output of the GISTIC2.0 module and converting the data for use with MAGI, HotNet2, and CoMEt.

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magi-images

Docker images for deploying the MAGI web app

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magi-stat-server

A JSON-based statistics server in Tornado for supplying enrichments to MAGI

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Perfect-Phylogeny-Constructor-and-Visualizer

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snv-processing

A script for converting MAF files for use with MAGI, CoMEt, and HotNet2.

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