randomeffect

AIH_metagenome

code to reproduce AIH results

avoid-data-disaster

http://tinyurl.com/data-disasters

benamenco.github.io

Computational-boot-camp

d3

Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:

data-formatting

docker-galaxy-stable

:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.

ecogg

GG's microbial ecology scripts

efficientR

Efficient R programming: a book

examples

Code examples for "Lightweight Django", by Julia Elman and Mark Lavin.

friendly-github-intro

This is a beginner friendly introduction to making open, version-controlled, and collaborative projects using Github.

galaxy-metagenomics

:whale: Galaxy Docker repository for metagenomics (Galaxy metagenomics flavour)

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics

jansson_snijders_collaborative_cross

JSM2016slides

Links to slides for talks at the 2016 Joint Statistical Meetings in Chicago

liuyxpp.github.io

My homepage.

MicrobeMiseq

Set of useful functions and scripts for analyzing amplicon Miseq data.

Microbiome-Analysis-Course-Stat.-Analysis-of-Genomics-

microbiome-tools

Combine dada2 and phyloseq

microbiomics

Tools for microbiome data analysis

MIT.6.00.1x

edX Computer Science Course

perl-intro

Probabilistic-Programming-and-Bayesian-Methods-for-Hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

r-intermediate

An intermediate level course on the R statistical programming language

R_Scripts

A repository for R scripts useful for data manipulation.

Sequencing_Analysis

Analysis of 246 DNA extractions performed by Morgan Meade during the 2015-2016 academic year

ThinkBayes

Code repository for Think Bayes.

trialstracker

Analysis and front-end code for http://trialstracker.ebmdatalab.net/

VSEARCH_workflow

A shell script used to process raw Illumina amplicon data through VSEARCH and QIIME