randombrein / KmerFreq

Program that produce the most frequent DNA-k-mers of arbitrary length sorted by frequency in a given FASTQ file.

#kmer_freq

Program that produce the most frequent DNA-k-mers of arbitrary length sorted by frequency in a given FASTQ file.

###usage kmer_freq --filename --kmersize --topcount

test run with `make run`
`PAGING` flag can be switched for page-mapped file reads using POSIX mmap().

###roadmap

• switch to batch'd realloc() line buffer for page-mapped FASTQ file read.
• determistic offset skip for page-mapped FASTQ files.