randel

causalml

Uplift modeling and causal inference with machine learning algorithms

plotly.R

An interactive graphing library for R

moderncv

A modern curriculum vitae class for LaTeX

grf

Generalized Random Forests

RNAseq-workflow

A repository for setting up a RNAseq workflow

systemsgenetics

Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool

goes-notify

A script that checks for a better Global Entry enrollment appointment time

NMF

NMF: A Flexible R package for Nonnegative Matrix Factorization

mcp

Regression with Multiple Change Points

ANCOMBC

Differential abundance (DA) and correlation analyses for microbial absolute abundance data

fusion_twas

methods for functional summary-based imputation

adult-human-brain

Cytograph version used for adult human-brain analysis

deconv_benchmark

Proteus

R package for analysing proteomics data

goes-notifier

Texts and tweets for new global entry interview slots

ImPartial

Interactive deep learning whole-cell segmentation and thresholding using partial annotations

deep_omics

Repository for Short Course: Deep Learning in Omics

clustermole

Unbiased single-cell transcriptomic data cell type identification

nih_reporter_api

R code to work with the NIH RePORTER API

cFIT

Common Factor Integration & Transfer learning (cFIT) for single cell RNA-seq data

ramwas

RaMWAS: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms

Epiclomal

Epiclomal package, software for clustering of sparse DNA methylation data

RNA-seq

A shell pipeline for analyzing expression and variants in RNA-seq data based on STAR-RSEM and GATK

ESCO

Single cell simulator with gene co-expression

markerpen

Marker Gene Detection via Penalized Principal Component Analysis

DACT

Testing for mediation effects in genome-wide epigenetic studies

rnaseq

RNA-seq quantification pipeline used by the eQTL Catalogue

MICS

MICS: cell-type-specific mediation detection

X.ING

Code for X-ING project

multi-omics_cTI