Rafael Neto Henriques's repositories
Free-water-elimination-DTI
Reproduce the artice Hoy et al. 2014 Optimization of a free water elimination two-compartment model for diffusion tensor imaging. Neuroimage 103:323-33. doi: 10.1016/j.neuroimage.2014.09.053
pybrain_dipy
Two days dipy workshop
gibbs-removal
In this repository, I am sharing an algorithm to suppress Gibbs artefact.
dwi_pca_denoising
In this repository, I am sharing the PCA denoising code implemented for my PhD thesis.
PCAdenoising
In this repository I am sharing all the code used for my following study:
DIPY_workshop
This repository contains the tutorials for the DIPY workshop
disimpy
Massively parallel Monte Carlo diffusion MR simulator written in Python
DKI_svoxel_examples
In this repo, I will generate diffusion-weighted signals of some simple single voxels to process DTI and DKI measures.
fweDTI_SSvsMS
In this repository, I am sharing some code comparing the accuracy/precision of single-shell and multi-shell free water elimination DTI using synthetic signals.
Hybrid-PCA
In this repository, I am showing how one can run the Hybrid PCA denoising. I also included the code to generate all figures of my presentation for the ESMRMB-ISMRM joint annual meeting.
pyAFQ
Automated Fiber Quantification ... in Python
ReScience-submission
ReScience submission repository