In this repository, I am sharing all code used to for the following study:
Henriques, Ianus, Novello, Jovicich, Jespersen, Shemesh. Efficient PCA denoising of spatially correlated redundant MRI data. Imaging Neuroscience (In Press).
- PCA_data_analysis_clinical_final_DKI_Fig6_Fig7_Fig8_SFig8.ipynb - contains all code relative to the clinical data analysis
- PCA_data_analysis_preclinical_final_Fig4_Fig5_SFig7_SFig9.ipynb - contains all code relative to the preclinical data analysis
- simulations - this folder contains the notebooks used to produce the study simulations
- previous_vesion - this folder contains a copy of the notebooks used for the first version of the study's manuscript (before peer-review). The manuscript first version can be found here: https://www.biorxiv.org/content/10.1101/2023.03.29.534707v1.full
The data used for this study can be found here: https://zenodo.org/records/10200469