rafaelfsilva / 1000genome-sequential

Sequential version of the 1000Genome workflow from http://github.com/pegasus-isi/1000genome-workflow

1000genome-sequential

Requirements:

• Python 3.6 or later
• Mapplotlib: pip install matplotlib

Instructions on how to run the sequential workflow:

$ git clone https://github.com/rafaelfsilva/1000genome-sequential
$ cd 1000genome-sequential
$ export PATH=$PATH:$PWD/bin
$ ./prepare_input.sh
$ ./1000genome-workflow-spec.py

Instructions to run a single program of the workflow:

The following instructions assume at least a successful run of the workflows has been completed.

From the 1000genome-sequential folder run the following:

$ cd data/20130502
$ individuals.py ALL.chr1.250000.vcf 1 1 1001 3000