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Rich Abdill (rabdill)

rabdill

Geek Repo

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Company:University of Chicago

Location:Philadelphia, USA

Home Page:https://richabdill.com

Twitter:@richabdill

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Organizations
blekhmanlab-deprecated

Rich Abdill's starred repositories

microbiomeHD

Cross-disease comparison of case-control gut microbiome studies

Language:PythonStargazers:66Issues:0Issues:0

awesome-multi-omics

List of software packages for multi-omics analysis

License:MITStargazers:683Issues:0Issues:0

vegan

R package for community ecologists: popular ordination methods, ecological null models & diversity analysis

Language:RLicense:GPL-2.0Stargazers:435Issues:0Issues:0

GNOLL

GNOLL is an efficient dice notation parser for multiple programming languages that supports a wide set of dice notation

Language:YaccLicense:GPL-3.0Stargazers:38Issues:0Issues:0

poker-odds

A lightweight command line tool for calculating poker hand probabilities

Language:JavaScriptLicense:MITStargazers:161Issues:0Issues:0

tqdm

:zap: A Fast, Extensible Progress Bar for Python and CLI

Language:PythonLicense:NOASSERTIONStargazers:27810Issues:0Issues:0

songbird

Vanilla regression methods for microbiome differential abundance analysis

Language:PythonLicense:BSD-3-ClauseStargazers:54Issues:0Issues:0

sra-tools

SRA Tools

Language:CLicense:NOASSERTIONStargazers:1066Issues:0Issues:0

STAR

RNA-seq aligner

Language:CLicense:MITStargazers:1767Issues:0Issues:0

scrumlord

Continuous administration of the Greene Lab's electronic scrum

Language:PythonLicense:BSD-3-ClauseStargazers:13Issues:0Issues:0

DESeq2

Differential expression of RNA-seq data using the Negative Binomial

Language:RStargazers:339Issues:0Issues:0

WreckItRalphs

Language:TeXLicense:GPL-3.0Stargazers:13Issues:0Issues:0

bigmds

Language:RLicense:NOASSERTIONStargazers:14Issues:0Issues:0

hello

Word-guessing game

Language:TypeScriptLicense:MITStargazers:350Issues:0Issues:0

VOSviewer-Online

VOSviewer Online is a tool for network visualization. It is a web-based version of VOSviewer, a popular tool for constructing and visualizing bibliometric networks.

Language:JavaScriptLicense:MITStargazers:80Issues:0Issues:0

s3cmd

Official s3cmd repo -- Command line tool for managing S3 compatible storage services (including Amazon S3 and CloudFront).

Language:PythonLicense:GPL-2.0Stargazers:4488Issues:0Issues:0

rxivistr

Language:RLicense:GPL-3.0Stargazers:1Issues:0Issues:0

decontam

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

Language:RStargazers:139Issues:0Issues:0

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

Language:RLicense:LGPL-3.0Stargazers:458Issues:0Issues:0

figaro

An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters

Language:PythonLicense:GPL-3.0Stargazers:76Issues:0Issues:0

signalboost

~anonymous text blasts and hotlines over signal

Language:JavaScriptLicense:GPL-3.0Stargazers:38Issues:0Issues:0

kraken2

The second version of the Kraken taxonomic sequence classification system

Language:C++License:MITStargazers:679Issues:0Issues:0

Tale

Interactive fiction (text adventure) and Mud framework

Language:PythonLicense:LGPL-3.0Stargazers:142Issues:0Issues:0

transpose-publishing.github.io

Source for https://transpose-publishing.github.io (TRANsparency in Scholarly Publishing for Open Scholarship Evolution)

Language:JavaScriptStargazers:3Issues:0Issues:0

bowtie2

A fast and sensitive gapped read aligner

Language:C++License:GPL-3.0Stargazers:632Issues:0Issues:0

pretty-s3-index-html

A prettier index.html for listing public files and folders in Amazon S3 buckets. (UNMAINTAINED)

Language:HTMLStargazers:114Issues:0Issues:0

flask-gopher

A Flask extension to support the Gopher protocol

Language:PythonLicense:GPL-3.0Stargazers:73Issues:0Issues:0

shields

Concise, consistent, and legible badges in SVG and raster format

Language:JavaScriptLicense:CC0-1.0Stargazers:22900Issues:0Issues:0

bottle

bottle.py is a fast and simple micro-framework for python web-applications.

Language:PythonLicense:MITStargazers:8328Issues:0Issues:0

BURST

An ultrafast optimal aligner for mapping large NGS data to large genome databases.

Language:CLicense:AGPL-3.0Stargazers:56Issues:0Issues:0