r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq

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Merging multiple fragment samples

seoyeonoh12 opened this issue · comments

Hi,

I have merged multiple fragment samples based on the tutorial.
After merging, the generated anndata does not contain 'n_fragment' and 'tsse'.
How can I check the quality of merged data (not separately)?

Thank you in advance.