r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq

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Transitioning from v1 to v2 SnapATAC

mej54 opened this issue · comments

Hi,

We previously used SnapATAC (v1.0.0) to run some analyses. We are hoping to wrap up those analyses using v1.0.0, but we need to re-install v1.0.0 and I can't seem to find it on the releases page. Is there any way to access/install the SnapATAC v1.0.0?

As we transition over to SnapATAC2, are there any recommendations for how to transition the old R-based data structures over to the new python-based SnapATAC2 data structures so that we don't have to re-run our previous analyses?

Thanks!

  • Molly