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r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq

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Error in addBmatToSnap

strawberry789 opened this issue · comments

commented

I ran this:

snaptools snap-add-bmat
--snap-file=file.snap
--bin-size-list 1000 5000 10000
--verbose=True

and then,

showBinSizes("file.snap")

showing,

1000, 5000, 10000

But when I ran afterwards:

object = addBmatToSnap(object, bin.size=5000, num.cores=1)

I get,

Error in value[3L]: Warning @addBmat: 'AM/bin.size/idx' not found in file.snap

What's wrong and how should I resolve it? Thanks.

commented

I ran this:

snaptools snap-add-bmat --snap-file=file.snap --bin-size-list 1000 5000 10000 --verbose=True

and then,

showBinSizes("file.snap")

showing,

1000, 5000, 10000

But when I ran afterwards:

object = addBmatToSnap(object, bin.size=5000, num.cores=1)

I get,

Error in value[3L]: Warning @addBmat: 'AM/bin.size/idx' not found in file.snap

What's wrong and how should I resolve it? Thanks.

Have you solved your problem? I have also met the same problem