Drosophila melanogaster correspondence for mouse "gencode.vM16.gene.bed" to run Gene-based annotation

Question

Drosophila melanogaster correspondence for mouse "gencode.vM16.gene.bed" to run Gene-based annotation

strawberry789 opened this issue 3 years ago · comments

Hello,

I'm trying to use snapATAC to analyze my drosophila single-cell ATAC data. Where would I find the drosophila version for the mouse gencode.vM16.gene.bed? What other drosophila-specific databases/files would I need? Is Homer drosophila data available? Is there a drosophila correspondence for the file "findMotifsGenome.pl"?

Thank you!

Joyce

Liqingzeng · Answer 1 · Fri Mar 11 2022 11:47:22 GMT+0800 (China Standard Time)

Hi,
I have the same problem as you, have you found a solution to generate a new encode gene.bed file ? Or do you know what information is in the bed file?