Bug in runJaccard()

Question

Bug in runJaccard()

kridsadakorn opened this issue 4 years ago · comments

Hi,

Thank you for developing a nice package. I want to try out SnapATAC. I installed the code from Github and I tried to run the demo but it has an error. Do you have any idea why?

> data(demo.sp);
> demo.sp = makeBinary(demo.sp, mat="bmat");
> demo.sp = runJaccard(obj=demo.sp, mat="bmat", bin.downsample=1, tmp.folder=tempdir())
Error in (function (cl, name, valueClass)  : 
  'method' is not a slot in class "jaccard"

Thank you very much.

AndresLugoCas · Answer 1 · Thu Apr 15 2021 23:05:59 GMT+0800 (China Standard Time)

I have the same problem. You were able to fix it?

lf2684 · Answer 2 · Wed Apr 28 2021 05:48:00 GMT+0800 (China Standard Time)

I also encountered this problem--I think after viewing the source code that it's because the jmat class doesn't actually have methods as a slot? I believe the developer posted that runJaccard has actually been discontinued, so I am confused as to how to normalize the data now. For reference: #125