r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq

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Version of python

ldorozco opened this issue · comments

Hello,
Can you clarify whether we should use python2 or python3? On the SnapATAC page it says:
"Python (>= 2.7 & < 3.0) (SnapTools) (highly recommanded for 2.7)"

But some of the dependencies require python 3.5 or above (ex leidenal).

Thank you for your time.