Joseph R. Quinn's repositories
pluma-online
Online system for the FIU Plugin-based Microbiome Analysis application
angular-bulma
Monorepo for the `angular-bulma` project
quinnjr.tech
My public website
apollo-angular
A fully-featured, production ready caching GraphQL client for Angular and every GraphQL server 🎁
ATria
PluMA plugin that runs the Ablatio Triadum (ATria) centrality algorithm (Cickovski et al, 2015, 2017)
BMTool
Generate bitmask with BMTool (Rotmistrovsky and Agarwala, 2011)
cuid-nullsafe
Dart port of cuid - collision resistant unique identifiers: https://usecuid.org/. Coverted to Null-Safe Dart
Degree
PluMA plugin to compute degree centrality (Freeman, 1979)
Extract
PluMA plugin to extract sequences from a FASTA file that contain a target subsequence
GPUATria
PluMA plugin to run the Ablatio Triadum (Cickovski et al 2015, 2017) algorithm on the GPU
graphql
GraphQL (TypeScript) module for Nest framework (node.js) 🍷
MetaSPAdes
PluMA plugin to run MetaSPAdes (Nurk et al, 2017) genome assembler
MinPD
Distance-based phylogenetic analysis and recombination detection (Buendia and Narasimhan, 2004)
nestjs-apollo-client
An Apollo Client for use on the backend with NestJS
nestjs-macos-repro
Minimal reproduction repo for MacOS issues with @nestjr/ng-universal
ng-recaptcha
Angular component for Google reCAPTCHA
ng-universal
Angular Universal module for Nest framework (node.js) 🌷
passport
Passport module for Nest framework (node.js) 🔑
PluMA
A lightweight and flexible analysis pipeline
puppetlabs-java
Puppet Module to manage Java
PyMuPDF
PyMuPDF is a high performance Python library for data extraction, analysis, conversion & manipulation of PDF (and other) documents.
Qiime2DADA2
PluMA plugin to run DADA2 denoiser in Qiime2 (Bolyan et al, 2019)
QualiMap
Generate a QualiMap (Garcia-Alcalde et al, 2012) report
SRPRISM
Single Read Paired Read Indel Substitution Minimizer (SRPRISM) (Morgulis and Agarwala, 2020)
UMAP
Differential analysis with UMAP (McInnes et al, 2018)