Nicholas Mancuso (quattro)

quattro

Geek Repo

Company:@mancusolab

Location:los angeles

Home Page:www.mancusolab.com

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Nicholas Mancuso's repositories

CLAPmagrittrCLAP

Improve the readability of R code with the pipe

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mister

Simulation study of various Mendelian Randomization approaches using summary data

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ASHG18

Notes

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DS2VCF

Annotate VCF file with dosages estimated from genotype likelihoods

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labtools

Repo for common tools/scripts

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optfun

approximate optimization in demented times

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PAINTOR_V3.0

Fast, integrative fine mapping with functional data

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BFFs

comparison of a few ways to infer posterior values under a causal linear mixed model

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flashpca

Fast Principal Component Analysis of Large-Scale Genome-Wide Data

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fusion_twas

methods for functional summary-based imputation

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geno-sugar

Utilities for handling genetic data for GWAS

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jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

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limix-feedstock

A conda-smithy repository for limix.

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LinearThunderdome

Thunderdome of linear models in ill-conditioned settings

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lineax

Linear solvers in JAX and Equinox. https://docs.kidger.site/lineax

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numpyro

Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.

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optimistix

Nonlinear optimisation (root-finding, least squares, ...) in JAX+Equinox. https://docs.kidger.site/optimistix/

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prior_var_empbayes

Testing empirical bayes for inference of prior variance terms in finemapping

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pyfizi-feedstock

A conda-smithy repository for pyfizi.

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Randomly-Pivoted-Cholesky

Code for the paper "Randomly pivoted Cholesky: Practical approximation of a kernel matrix with few entry evaluations"

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REMLSketch

Sketching version of REML inference

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sleuth

Differential analysis of RNA-Seq

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spa

a tool for analysis of spatial structure in genetics data

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staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

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