qiime2 / q2-types

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Revert scipy to an older version to correct statsmodels conflict.

David-Rod opened this issue · comments

Bug Description
scipy reorganization in v1.3 breaks statsmodels v0.9.

Steps to reproduce the behavior
Examine busywork build with scipy 1.3. Note breakage in q2-gneiss and q2-longitudinal.

Expected behavior
Temporarily pinning to a pre-1.3 version of scipy should allow q2-gneiss and q2-longitudinal to build correctly. Use busywork to confirm.

Screenshots
q2-longitudinal

Computation Environment

  • Busywork Darwin
  • Busywork Linux

Comments

  1. Pin to older version of scipy until next version of statsmodels is released.

References

  1. Original statsmodel issue report