qiime2 / q2-types

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zipped fasta gets imported and fails silently

BenKaehler opened this issue · comments

Bug Description
zipped fasta gets imported and fails silently

Steps to reproduce the behavior

  1. gzip a fasta file
  2. tools import --type FeatureData[Sequence] it
  3. unzip the archive and observe the horror

Expected behavior
It would have been super-nice if import noticed that the file was zipped and unzipped it

Computation Environment

  • OS: linux of some sort
  • QIIME 2 Release 2018.4

This has been addressed - PR xref mentioning the resolution.