Qianqian Li's repositories
SARS-Cov-2--GISAID
This repo summarises the data sources, web application, tools and reviews paper of SARS-Cov-2. Trace the study progress of SARS-Cov-2 based on GISAID data.
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
Bioinformatics-Tools-Summary
This repo summaries the main bioinformatics tools.
ML-DL-resources
The repo lists resources of ML&DL
Structure-Bioinformatics-Summ
Tools, database, papers summarisation
awesome-public-datasets
A topic-centric list of HQ open datasets.
awesome-rshiny
An awesome R-shiny list!
Bioinformatics-analysis-of-SARS-Cov-2
This repo contains all my exploration analysis of SARS-Cov-2 data, omics analysis, Network interaction, ML related analysis...
COVID-19
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE - dashboard display of data(analysis)
covid-19-data
Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data
Dashboard---playground
The app contains info about Rshiny, python dashboard.
gatk
Official code repository for GATK versions 4 and up
GWAS-data-sources
Public data sources, database and publications
LibAUC
LibAUC: A Deep Learning Library for X-Risk Optimization -- multi-label-prediction
monkeypox
Nextstrain build for monkeypox virus -- phylogenetics tree related analysis
Monkeypox-resources-summary
This repo is summary the data source, github tools, publication information.
Multi-lable-classification
Summary of methods for multi-lable classification (medical image data)
pangolin
Software package for assigning SARS-CoV-2 genome sequences to global lineages.
PCA-analysis-
PCA, code, examples, application (related paper)...
Pillow
The friendly PIL fork (Python Imaging Library)
proteomics-source-summary
summary data source, methods, tools for proteomics study...
pymol-open-source
Open-source foundation of the user-sponsored PyMOL molecular visualization system.
pyro
Deep universal probabilistic programming with Python and PyTorch
R-outbreak-info
R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.
SARS-CoV-2_Sequencing
A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
SARS-CoV-mutation-prediction
This repo is for the work in a science paper, for SARS mutation. prediction
Season-flu-resouces-summary
Summary the data sources, publications and tools...
seasonal-flu
Scripts. config, and snakefiles for seasonal-flu nextstrain builds