Beast code in Giters

pyranges's repositories

Performant Pythonic GenomicRanges

Language:PythonMIT420 12 216

The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups.

Language:CBSD-3-Clause204 6 31

Numerical Run Length Encoding and Arithmetic in Cython

Language:PythonMIT16 4 6

Bam to Pandas DataFrame, quickly

Language:Cython12 3 7

PyRanges as a DataFrame subclass.

Language:PythonMIT800

Read bigwig into pyranges or dataframe

Language:Cython5 30

Cython helper library for pyranges. Find nearest interval in linear time at C speed.

Language:CythonBSD-3-Clause2 2 4

Fishers Exact Test for Python (Cython)

Language:PythonBSD-3-Clause020

PyRanges docs

Language:R030

pyranges add-on to fetch annotation data from UCSC, gencode and ensembl

Language:Python030

Example data for pyranges

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