pxhhappy's repositories
ariba
Antimicrobial Resistance Identification By Assembly
Brucella_VF
:mag_right: :pill: Mass screening of contigs for brucella virulence genes
CoSSA-workflows
CoSSA (Prodhomme et al., 2019) is a set of workflows used to identify quickly and efficiently haplotype specific SNPs linked to a trait of interest from Whole Genome Sequencing data. All the contributors to the design of these workflows are Danny Esselink, Charlotte Prodhomme and Theo Borm (Wageningen University UR Plant Breeding).
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
ML-For-Beginners
12 weeks, 24 lessons, classic Machine Learning for all
PangenomeAlignmentGenerator
Align SRAs to pangenome FASTA file generated by Roary
Python-100-Days
Python - 100天从新手到大师
regression-power
Power Regression
Roary
Rapid large-scale prokaryote pan genome analysis
snippy
:scissors: :zap: Rapid haploid variant calling and core genome alignment
snp-sites
Finds SNP sites from a multi-FASTA alignment file
tutorials
In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!
wikiq
an xml to .tsv converter for wikimedia XML data dumps