pwwang

try

Inspect a command's effects before modifying your live system

pipen-runinfo

Generate running information for jobs in pipen pipelines.

handson-ml3

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

infercnvpy

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

datar-arrow

single-cell-best-practices

https://www.sc-best-practices.org

parsnip

A tidy unified interface to models

luz

Higher Level API for torch

pipen-board

Visualizing configuration and running of pipen pipelines on the web

pipen-log2file

Save running logs to file for pipen

pipen-lock

Process lock for pipen to prevent multiple runs at the same time

scBERT

TaskMatrix

copier

Library and command-line utility for rendering projects templates.

argx

Supercharged argparse for Python

gptcommit

A git prepare-commit-msg hook for authoring commit messages with GPT-3.

vscode-gptcommit

Automated git commit messages using GPT models via gptcommit for VS Code.

imaginAIry

Pythonic AI generation of images and videos

test-datasets

Test data to be used for automated testing with the nf-core pipelines

YouPlot

A command line tool that draw plots on the terminal.

devbox

Instant, easy, and predictable development environments

gget

🧬 gget enables efficient querying of genomic reference databases

sigminer

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

best

Bam Error Stats Tool (best): analysis of error types in aligned reads.

codon

A high-performance, zero-overhead, extensible Python compiler using LLVM

commitgpt

Automatically generate commit messages using ChatGPT

scRNA-seq_notes

A list of scRNA-seq analysis tools

datar-pandas

The pandas backend for datar

datar-numpy

The numpy backend for datar.

d2

D2 is a modern diagram scripting language that turns text to diagrams.