pvdam3

Peter van Dam's repositories

FoEC2

Fusarium oxysporum Effector Clustering version 2

Language:PythonMIT3 3 2

Fusarium oxysporum effector clustering (FoEC) is a pipeline to identify candidate effector genes in a set of F. oxysporum genomes and apply hierarchical clustering on the presence-absence pattern of these genes.

Language:Python2 1 5

bioassay_plotting

R plotting for bioassays: fresh weight and disease index

Language:R010

ete3_plottree

Visualize a phylogenetic tree from RAxML output

Language:Python01 1

GO_term_overrepresentation

Find overrepresented GO terms on a chromosome compared to the rest of the genome

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lowercaseintronsbegone

Remove lowercase introns from a fastafile

Language:Python000