Tim Putman's repositories
cell_component_visualizer
Visual diagram of chlamydia infected cell that highlights the organelle or cell component based on the GO id input
vue_autocomplete
autocomplete component for Monarchinitiative.org built with Vue.js version 2
BigGIM_APIWrapper
Wrapper API to make the the BigGIM API Translator SMARTAPI compliant
ontobio
python library for working with ontologies and ontology associations
variant_table_component
vue.js component for displaying variant data from myVarient.info. Input is ClinVar Varient id
RheaReactionParser
Python class to retrieve and link data from http://www.rhea-db.org/. Generates a dictionary for each reaction consisting of rhea id, ec number and chebi ids for each reaction constiutent.
vue_autocomplete_demo
quick demo of a vue.js automplete
OLS-treeview
This is the standalone widget for the OLS treeview
WikidataIntegrator
A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpoint
d3-hierarchy
2D layout algorithms for visualizing hierarchical data.
CMOD.Django
CMOD Wikidata App built on Django Framework for editing Wikidata with existing GeneWIki bot code
cmdcolin.github.io
Homepage
Wikidata_Reporting_Site
web app to host statistics on Su Lab Wikidata Bot contributions
Machine-Learning-Tutorials
machine learning and deep learning tutorials, articles and other resources
mygeneinfo_gh
MGI contributions
wikidatabots_gh
Wikidatabots source code
Apollo
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin
jbrowse
A modern genome browser built with JavaScript and HTML5.
single-read-mapping
Pipeline for preparing and mapping *.fastq data to reference mapping genome of small, prokaryotic or viral genomes, with low diversity.
sequence_tools
.fastq reads containing variants from a draft genome are sequesterded, categorized and counted by variant.