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purpleKestrel

purpleKestrel

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phangorn

Phylogenetic analysis in R

Language:RStargazers:201Issues:0Issues:0

vcflib

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

Language:C++License:MITStargazers:613Issues:0Issues:0

precise-db

A high-fidelity E. coli RNA-seq compendium

Language:Jupyter NotebookLicense:MITStargazers:32Issues:0Issues:0

pggb-paper

The PanGenome Graph Builder

Language:TeXLicense:MITStargazers:10Issues:0Issues:0

pggb

the pangenome graph builder

Language:ShellLicense:MITStargazers:355Issues:0Issues:0

pgge

the pangenome graph evaluator

Language:ShellLicense:MITStargazers:22Issues:0Issues:0

PanPipes

Test sets and pipeline scripts for pan-genomic graph analysis

Language:PythonStargazers:15Issues:0Issues:0

METABOLIC

A scalable high-throughput metabolic and biogeochemical functional trait profiler

Language:PerlStargazers:172Issues:0Issues:0

metaGEM

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

Language:PythonLicense:MITStargazers:188Issues:0Issues:0

WGCNA_tutorial

A step-by-step tutorial for Weighted correlation network analysis (WGCNA)

Stargazers:56Issues:0Issues:0

growthcurver

Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whose parameters (the growth rate, the initial population size, and the carrying capacity) provide meaningful population-level information with straight-forward biological interpretation.

Language:RStargazers:44Issues:0Issues:0

Hands-On-Data-Analysis-with-Pandas-2nd-edition

Materials for following along with Hands-On Data Analysis with Pandas – Second Edition

Language:Jupyter NotebookLicense:MITStargazers:571Issues:0Issues:0

mhcglobe

MHCGlobe and MHCPerf for peptide-MHC binding prediction & allele-level performance estimation.

Language:PureBasicLicense:Apache-2.0Stargazers:2Issues:0Issues:0

panaroo

An updated pipeline for pangenome investigation

Language:PythonLicense:MITStargazers:259Issues:0Issues:0