This is the current repository of PseAAC-General. Oct. 2nd, 2017
The old repositiory here https://sourceforge.net/projects/pseb/files/ is deprecated
Source code in this repositiory is for Ubuntu Linux platform. We have tested these codes on Ubuntu 14.04.5 LTS. There is no guarantee that these codes can be compiled and executed on other platforms without modifications.
These codes depend on the lua-devel version 5.3. Please go to http://www.lua.org/download.html. Download a lua environment and configure that on your machine.
After your lua environment is ready, find out the location of your lua.hpp and liblua.a. They usually reside in positions like
xxxx/lua-5.3.4/install/include and xxxx/lua-5.3.4/install/lib, where xxxx is usually the directory you unpack your lua source codes.
Suppose the xxxx equals to ~/bin. You should then EDIT the following two lines of the Makefile in the directory pseb.
EXT_HEADER=~/bin/lua-5.3.4/install/include
EXT_LIB=~/bin/lua-5.3.4/install/lib
After saving the Makefile, just return to the PseAAC-General directory and type make. You will get all components of PseAAC-General compiled. You may type make install to collect all compiled binary executables to the bin directory in your PseAAC-General directory.
Please read the manual in the doc directory before you begin to use this software.
To test your compilation, just find the pseb executable and type ./pseb --help
For Microsoft Windows platform, just send emails to PufengDu@gmail.com. You will recieve a compiled executable for your Windows environment.
If you got any difficulties, just send emails to PufengDu@gmail.com to complain. We will try out best to fix it asap.
If you find PseAAC-General useful in your work, please cite the following two articles.
[1] Pufeng Du, Shuwang Gu, Yasen Jiao. PseAAC-General: Fast Building Various Modes of General Form of Chou’s Pseudo-Amino Acid Composition for Large-Scale Protein Datasets. International Journal of Molecular Sciences 15 (2014), pp.3495-3506 http://dx.doi.org/10.3390/ijms15033495
[2] Pufeng Du, Xin Wang, Chao Xu, Yang Gao. PseAAC-Builder: A cross-platform stand-alone program for generating various special Chou's pseudo-amino acid compositions. Analytical Biochemistry 425 (2012) pp.117-119 https://doi.org/10.1016/j.ab.2012.03.015