This repo contains a docker recipe to install the dependencies for pstjohn/emll. Since the method was based on tools in the pymc3 library, which itself relies on the deprecated Theano package, dependency installation can be a bit of a pain.
The pip-installed Theano has proven to be a bit more reliable than the one available via conda, although the installation of mkl via conda is more convenient.
To run the docker image, the following command mounts the examples/ directory and launches a jupyter lab instance:
docker run --mount type=bind,source="$(pwd)"/examples,target=/home/jovyan/examples \
-p 8888:8888 -it pstjohn/emll start.sh jupyter labThe image is also runnable on HPC systems (without sudo) with singularity.
singularity build emll.simg docker://pstjohn/emll
singularity exec emll.simg start.sh jupyter lab --no-browser --ip=0.0.0.0