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Patrick Schreiner (pschreiner)

pschreiner

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Location:Memphis, TN

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Patrick Schreiner's repositories

piClusterBuster

A Program for Automated piRNA Cluster Classification and Characterization

Language:RLicense:GPL-3.0Stargazers:3Issues:3Issues:1

bsmap

Unofficial repo for software vendoring or packaging purposes

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cis-x

Search for activating regulatory variants in the tumor genome

Language:PerlLicense:Apache-2.0Stargazers:0Issues:0Issues:0

fastqc

csf fork of fastqc for usage on selected reads of unaligned bam file

Language:JavaLicense:GPL-3.0Stargazers:0Issues:0Issues:0

GWAS

Genome-wide Association Study Tutorial

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igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

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markup

The code we use to render README.your_favorite_markup

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newCAR

newCAR allows for reproducibility of the workflow that we used to predict tumor-associated antigens in pediatric AMKL. A function to perform the Weighted Cumulative Percentage (WCP) data transformation is also available in this repository.

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Stealth

A program for codon optimization in the Zika virus vector, Aedes aegypti

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TruePaiR

Software for the Accurate Identification of Complementary piRNA Read Pairs in High-Throughput Sequencing Data

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RelocaTE

Find the locations of TEs using the TSD in unassembled short reads by comparing to a closely related reference genome assembly

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single-cell-viewer

R package to visualize scRNA sequencing data.

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stjudecab.github.io

Official website for St. Jude CAB

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TrimGalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

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