Pittsburgh Supercomputing Center's repositories
bridges2-examples
Different job examples running on Bridges-2
psc-wpdocs
WeDocs repo for documentation on PSC.edu
singularity-bat
A cat(1) clone with syntax highlighting and Git integration.
singularity-vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
apptainer
Just a list of Apptainer definition files maintained by the Biomed Applications Group
apptainer-bat
About A cat(1) clone with syntax highlighting and Git integration.
apptainer-chalk-cli
About Terminal string styling done right
apptainer-lowcharts
lowcharts is meant to be used in those scenarios where we have numerical data in text files that we want to display in the terminal to do a basic analysis.
apptainer-octave
About GNU Octave is software featuring a high-level programming language, primarily intended for numerical computations
apptainer-singularityce
Singularity Community Edition is 100% open source, BSD licensed software available for free.
practical-intro-to-apptainer
Exercises for the "Practical Intro to Apptainer in Bridges-2"
singularity
Just a list of Singularity definition files maintained by the Biomed Applications Group
singularity-beast2
BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences.
singularity-circos
Circos is a software package for visualizing data and information.
singularity-dua
View disk space usage and delete unwanted data, fast.
singularity-dust
du + rust = dust. Like du but more intuitive.
singularity-filtlong
Quality filtering tool for long reads
singularity-gnuplot
Gnuplot is a portable command-line driven graphing utility for Linux, OS/2, MS Windows, OSX, VMS, and many other platforms.
singularity-graphviz
Graphviz is a package of open-source tools initiated by AT&T Labs Research for drawing graphs specified in DOT language scripts.
singularity-guppy
Guppy is a data processing toolkit that contains the Oxford Nanopore Technologies’ basecalling algorithms.
singularity-imagemagick
Use ImageMagick® to create, edit, compose, or convert digital images.
singularity-nanoplot
Plotting scripts for long read sequencing data
singularity-pandoc
Pandoc is a free and open-source document converter, widely used as a writing tool and as a basis for publishing workflows.
singularity-porechop
Adapter trimmer for Oxford Nanopore reads
singularity-vim
Vim is a highly configurable text editor built to make creating and changing any kind of text very efficient.