Duncan Ralph (psathyrella)

psathyrella

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Duncan Ralph's repositories

partis

B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction

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ham

The fantabulous HMM compiler

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python-noaa

Python Bindings to the NOAA National Digital Forecast Database (NDFD)

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airr-formats

AIRR Community Data Models and File Formats

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bpp-core

Bio++ Core Library

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bpp-master-20140414

Clone on bio++ binaries and headers... because I haven't managed to the development branch to install properly

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bpp-phyl

Bio++ Phylogenetic Library

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bpp-popgen

Bio++ Population Genetics Library

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bpp-seq

Bio++ Sequence Library

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bppsuite

Bio++ Program Suite

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cft

Clonal family tree

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chimera-find

simple tool for evaluating the prevalence of chimeric sequences in B cell receptor NGS data

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dscripts

wrapper scripts to facilitate running partis on real data

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ecgtheow

Ancestral lineage reconstruction using BEAST or RevBayes

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eigen-git-mirror

THIS MIRROR IS DEPRECATED -- New url: https://gitlab.com/libeigen/eigen

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HILARy

Python package for inference of lineages in antibody repertoires

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smctc

Yet Another Fork

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