David Jewell's repositories
manim_tutorial
Files to accompany postings at talkingphysics.wordpress.com on how to use manim
ggexp
Publication Quality Exploratory Data Visualization Using ggplot2
immuneML
immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
NWChem_compiling
trouble shoot NWChem install
PECAN
Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction
Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
rr-r-publication
Reproducible Research Workshop Demo repository for publication writing in R
scTDA
Applications of topological data analysis to single-cell genomics
tregPaper
R Package to reproduce the analysis and figures in Human Regulatory T Cells From Umbilical Cord Blood Display Increased Repertoire Diversity and Lineage Stability Relative to Adult Peripheral Blood, Frontiers in Immunology 2020