Mei Wu's repositories
back-reference-qc
Detect outlier long-reads by using its Illumina counterpart.
continuous-methylation
A Snakemake pipeline for methylation analysis using long-read sequencing (third generation).
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
configs
Config files used to define parameters specific to compute environments at different Institutions
containers
A place where I hold container definition files.
contiguous-X
Attempt to build contiguous X with long reads
drop
Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
fix-sex-chrom
Ad-hoc solution to re-align sex chromosomes in male dual assemblies
flagger-smk
A Snakemake copy of WDL Flagger
HiFiAdapterFilt
Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
hugo-theme-cactus
Cactus theme for hugo
LDSA
A repository for Large Dataset Scientific Applications class at UU in the VT-2020 term. It's a class where we learn to utilize cloud-based applications and tools for scientific computing.
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
projectoriented.github.io
:building_construction: Personal website
rosalind-problems
A place to collaboratively solve rosalind problems
sfari-data-deposition
A one-off repo to share re-organization script.
test-datasets
Test data to be used for automated testing with the nf-core pipelines
tock-reserve
Script for making reservations on Tock
tools
Python package with helper tools for the nf-core community.