Pritam Kumar Panda's repositories
Molecular-Dynamics
Self explained tutorial for molecular dynamics simulation using gromacs
pritampanda15
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open-interpreter
A natural language interface for computers
project-based-learning
Curated list of project-based tutorials
workflows-nextflow
Workflow management with Nextflow and nf-core
GMX_MMPB-GBSA
gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.
nextflow-R-Seurat
RNAseq pipeline using Nextflow
CHAPERONg
CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses
Drug_designing_ML
Jupyter notebooks containing ML based approach for drug designing and chemoinformatics
grid_generation_vina
Generating a grid for docking in AutoDock Vina without using GUI tools like MGLTools
I-PV
Interactive Protein Sequence VIsualization/Viewer - Interactive Circos
lazypredict
Lazy Predict help build a lot of basic models without much code and helps understand which models works better without any parameter tuning
loupeR
Convert Seurat objects to 10x Genomics Loupe files.
misato-dataset
Structure based protein-ligand affinity
ML-TISCH2-scRNAseq
Repository containing various regression models implemented in Python, including Ridge, Random Forest, Gradient Boosting, SVR, and a neural network using Keras
nextflow-website
Nextflow public web site
nf-core-qualitycontrol
Quality control of fastq files using FastQC, MultiQC, FastP and FAQCS
practical_cheminformatics_tutorials
Practical Cheminformatics Tutorials
PSICHIC
PSICHIC (pronounced Psychic) - PhySIcoCHemICal graph neural network for learning protein-ligand interaction fingerprints from sequence data
python-docking
Notebooks and environment set up for IQB 2024 workshop
python_for_microscopists
https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1
r-seurat-scripts
Scripts to install as a Bioconda package for making workflows
sanbomics_scripts
scripts and notebooks from sanbomics
Spatial_Transcriptomics
10x Visium spatial transcriptomics data analysis with Scanpy
TDC
Therapeutics Commons: Artificial Intelligence Foundation for Therapeutic Science
VFVS
VirtualFlow for Virtual Screening
viamd
Visual Interactive Analysis of Molecular Dynamics