priesgo

course-uas-intro-bioinformatics

An introductory course to bioinformatics with an emphasis on pipeline development using workflow managers

leptospira-variant-calling

A simple bash pipeline for variant calling based on GATK, samtools, Picard and SnpEff.

bioconda-recipes

Conda recipes for the bioconda channel.

biodata

Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics

covigator

CoVigator - Monitoring SARS-CoV-2 mutations

covigator-ngs-pipeline

A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.

curahack

This repository contains test data for the curahack hackathon

GelReportModels

ntbcvariantbox

opencga

An Open Computational Genomics Analysis platform for big data processing and analysis in genomics

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

priesgo

priesgo profile repo

TCGAome

test-github-exercises