Pepe Flores's repositories
metassemble
Scripts to run several metagenomics assembly programs
scripts
Various scripts, bioinformatic pipelines, etc
TM_Cyanophages
Scripts used in the analysis of the paper: "A novel oceanic uncultured temperate cyanophage lineage"
anvio
An analysis and visualization platform for 'omics data
diamond
Accelerated BLAST compatible local sequence aligner.
homebrew-core
🍻 Default formulae for the missing package manager for macOS
homebrew-science
:microscope: Scientific formulae for the Homebrew package manager
mpipz_bit_thesis
thesis code
Notes
Miscellaneous config files and notes
pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
ppflrs.github.io
My Bootstrap 4 resume.
Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
radiohead
Repository of code for Radiohead's "House of Cards" music video.
rescience.github.io
ReScience website sources
rtg-core
RTG Core: Software for alignment and analysis of next-gen sequencing data.
scilifelab.github.io
Web portal for open source (research) projects at SciLifeLab
ShinyMC
R Shiny based interface for monitoring bioreactors
SpringboardCapstone_YelpAnalysis
Code for Springboard Capstone Project -- Analyzing 2 proposed tweaks to the Yelp rating system
toolbox
Tools for day to day bioinformatics work
training-prep-2015-09
Instructor training preparation, September 2015
vFADs
Scripts used in the analysis of the paper: "Cyanophage-encoded lipid-desaturases: oceanic distribution, diversity and function"
VirFinder
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
web
Web content for Meren Lab