Pelin Ozel's repositories
DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
manim
Animation engine for explanatory math videos
Neuropixel-2.0-IMRO-GUI
Creates customized imro channel mapping files for Neuropixels 2.0 recordings on a SpikeGLX acquisition system.
Neuropixel-2.0-Probe-Holder
3D Print design files for recoverable, chronic mouse/rat surgeries using the Neuropixel 2.0 with a dovetail attachment. Adapted from Juavinett, A. L., Bekheet, G., Churchland, A. K. (2018) 3D design files for chronically-implanted Neuropixels probes from "Juavinett, Ashley and Bekheet, George and Churchland, Anne K. (2018) bioRxiv". [Dataset] (Unpublished). --Pelin Ozel, 2022
Neuropixel-1.0-Probe-Holder
3D Print design files for recoverable, chronic mouse/rat surgeries using the Neuropixel 1.0 with a dovetail attachment. Adapted from Juavinett, A. L., Bekheet, G., Churchland, A. K. (2018) 3D design files for chronically-implanted Neuropixels probes from "Juavinett, Ashley and Bekheet, George and Churchland, Anne K. (2018) bioRxiv". [Dataset] (Unpublished).
spikeglx
Transform Spike GLX to other formats
scanning-paper
Source code for rodent head-scanning and place-field analysis presented in Monaco et al. (2014).