postpop / noIPIcycles

code and data for Stern et al. (2017)

Supplemental data and code for Stern et al. 2017

Data

All raw data are in data/ and contain pulse times and ipis. The files starting with data/Stern2014* contain different annotations of the song recordings (Canton S, period mutants, D. simulans) first published in Stern et al. 2014 (see David Stern's website for the raw recordings):

• data/Stern2014_FSSStern2014.mat - automatically segmented using the original version of FlySongSegmenter and taken from the data supplement to Arthur et al.,2013.
• data/Stern2014_FSSStern2014.mat - automatically segmented using a modified version of the FlySongSegmenter from the Murthy lab with parameters used in Coen et al. (2014)
• data/Stern2014_KyriacouManual2017.mat - manual annotations of parts of the recordings (Canton S and perL) downloaded from the data supplement to Kyriacou et al. (2017). data/Stern2014_KyriacouManual2017_pulses.mat contains the pulse waveforms for the manually annotated pulses.

data/Stern2017_FSSCoen2014 contains segmentations of new recordings of Canton S and perL flies segmented using the Murthy lab segmenter

Code and figures

• spectra contains code and data for calculating the IPI spectra for all data sets.
• code contains general source code used by the scripts.
• Fig* folders contain code and data to reproduce the figures in the paper - see comments in the respective scripts.