poseidonchan / TAPE

Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)

https://sctape.readthedocs.io/

poseidonchan/TAPE Issues

Sampling takes too much time, can use GPU?
Updated 3 months ago2
reproducing result for pbmc
Updated 7 months ago2
unable to get expected results
Closed 2 years ago2
Data format for bulk RNA-seq with 10X UMI data as reference: counts, TPM or PFKM?
Updated a year ago3
data normalization
Updated a year ago2
Popping Figure
Updated a year ago1
ValueError: Found array with 0 sample(s) (shape=(0, 5000)) while a minimum of 1 is required by MinMaxScaler
Updated a year ago2
Guidance on selecting parameters and choice of data scaling
Updated a year ago1
ValueError: Bin edges must be unique: array
Closed a year ago3
Accessing signature matrix when adaptive = False?
Updated a year ago4
About program operation
Updated 2 years ago2