Yufei Chen's repositories
DOIHelper
Extracts DOI Links and bibilography from PDF files.
fcoex
The fcoex package implements an easy-to use interface to co-expression analysis based on the FCBF (Fast Correlation-Based Filter) algorithm. it was implemented especifically to deal with single-cell data. The modules found can be used to redefine cell populations, unrevel novel gene associations and predict gene function by guilt-by-association.
nbpreview.py
A simple Python wrapper for nbpreview.
PMCitE
A utility to query the NCBI database for citation data/bibliography.
RankCorr
A marker selection method for scRNA-seq data based on rank correlation
RiboMiner
a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
RxPY
Reactive Extensions for Python, https://rxpy.rtfd.io
seurat-disk
Interfaces for HDF5-based Single Cell File Formats
slurm-template
Cookiecutter for snakemake slurm profile